track XT_9_1_XB
bigDataUrl XT9_1_XB_1-14-20.bb
shortLabel XT 9.1-XB
longLabel Xenopus tropicalis 9.1-Xenbase
group gene_models
type bigBed 12
visibility full
searchIndex name
searchTrix XT9_1_pred.ix
priority 1

track XT9_1_GS_10_5
bigDataUrl XT9_1_GS_stage10.5.bb
shortLabel GS-Stage 10.5
longLabel Genome segmentation-Stage 10.5
group genome_seg
type bigBed 12
visibility pack
itemRgb on
priority 2

track XT9_1_GS_12_5
bigDataUrl XT9_1_GS_stage12.5.bb
shortLabel GS-Stage 12.5
longLabel Genome segmentation-Stage 12.5
group genome_seg
type bigBed 12
visibility hide
itemRgb on
priority 3

track TFBS_blastula
bigDataUrl TFBS_blastula_v1_1.bb
shortLabel TFBS-Blastula
longLabel TFBS-Blastula
type bigBed 12
group TFBS
visibility dense
priority 4

track TFBS_neurula
bigDataUrl TFBS_neurula_v1_1.bb
shortLabel TFBS-Neurula
longLabel TFBS-Neurula
group TFBS
type bigBed 12
visibility hide
priority 5

track TFBS_gastrula
bigDataUrl TFBS_gastrula_v1_1.bb
shortLabel TFBS-Gastrula
longLabel TFBS-Gastrula
group TFBS
type bigBed 12
visibility hide
priority 6

track TFBS_tailbud
bigDataUrl TFBS_tailbud_v1_1.bb
shortLabel TFBS-Late tailbud
longLabel TFBS-Late tailbud
group TFBS
type bigBed 12
visibility hide
priority 7

track NA_XVI_4F
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/variants/xt9_1/NA_XVI_4F_piloncall.vcf.gz
shortLabel Nigerian A female variants
longLabel Nigerian A female variants
group Strain Specific SNVs
type vcfTabix
visibility hide
priority 8

track NH_IX_8F
bigDataUrl https://bigfrog.xenbase.org/pub/xenbase/genomics/variants/xt9_1/NH_IX_8F.vcf.gz
shortLabel Nigerian H female variants
longLabel Nigerian H female variants
group Strain Specific SNVs
type vcfTabix
visibility pack
priority 9

track IC_V_1F
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/variants/xt9_1/IC_V_1F_piloncall.vcf.gz
shortLabel Ivory Coast female variants
longLabel Ivory Coast female variants
group Strain Specific SNVs
type vcfTabix
visibility hide
priority 10

track NBH_IX_4F
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/variants/xt9_1/NBH_IX_4F.vcf.gz
shortLabel Nigerian BH female variants
longLabel Nigerian BH female variants
group Strain Specific SNVs
type vcfTabix
visibility hide
priority 11

track cas9_genes_t7_prom
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/CRISPR/xt9_1/cas9_ngg_dt7_all.bb
shortLabel Coding guide RNAs
longLabel Guide RNAs for coding regions
group CRISPR
type bigBed 9 +
visibility squish
priority 12

track cas9_wg_sp6t7_prom
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/CRISPR/xt9_1/cas9_ngg_dt7.bb
shortLabel Whole genome guide RNAs
longLabel Guide RNAs for whole genome
group CRISPR
type bigBed 9 +
visibility hide
priority 13

track cpf1_genes_tttv_pam
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/CRISPR/xt9_1/lbcpf1_tttv_all.bb
shortLabel TTTV PAM coding RNAs
longLabel Guide RNAs for Coding regions TTTV PAM
group CRISPR
type bigBed 9 +
visibility hide
priority 13

track cpf1_wg_tttv_pam
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/CRISPR/xt9_1/lbcpf1_tttv.bb
shortLabel TTV PAM genome RNAs
longLabel Guide RNAs for whole genome TTTV PAM
group CRISPR
type bigBed 9 +
visibility squish
priority 14

track cpf1_genes_tttn_pam
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/CRISPR/xt9_1/lbcpf1_tttn_all.bb
shortLabel TTTN PAM coding RNAs
longLabel Guide RNAs for Coding regions TTTN PAM
group CRISPR
type bigBed 9 +
visibility hide
priority 15

track cpf1_wg_tttn_pam
bigDataUrl https://bigfrog.xenbase.org/xenbase/pub/genomics/CRISPR/xt9_1/lbcpf1_tttn.bb
shortLabel TTTN PAM genome RNAs
longLabel Guide RNAs for whole genome TTTN PAM
group CRISPR
type bigBed 9 +
visibility hide
priority 16